Gene: Cre01.g002500
Overview
| Common name: | COP2,COP1,COP21 |
| Defline: | Chlamyopsin 2/1 |
| Description: | Opsin-related, retinal binding protein; Genbank entry AF295371; shows evidence for alternative splicing, giving COP2 and COP1; present in thylakoid-enriched fraction based on mass spectrometric peptide identification; This is unrelated to constitutive photomorphogenesis protein 1 (COP1) in Arabidopsis thaliana |
| Synonyms: | COP1,Cre01.g002500.t1.1,COP2,g60.t1 |
| Chromosome: | chromosome 1 |
Protein Localization
A plasmid for expressing Cre01.g002500 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre01.g002500-Venus-3xFLAG
Imaged strain: CSI_LW09H11
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/homogeneous/not pyrenoid depleted
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre16.g663800 | TPT25,CGL51 | Cre01.g002500 | COP2,COP1,COP21 | Wang et al. 2023 |
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.003433_1 | CLIP2.003433 | intron | 80 | 6.1 |
| CLIP2.003600_1 | CLIP2.003600 | CDS | 80 | 6.1 |
| CLIP2.003600_2 | CLIP2.003600 | CDS | 80 | 6.1 |
| LMJ.RY0402.164859_1 | LMJ.RY0402.164859 | intron | 95 | 5.5 |
| LMJ.RY0402.164859_2 | LMJ.RY0402.164859 | intron | 95 | 5.5 |
| LMJ.RY0402.180090_1 | LMJ.RY0402.180090 | 3'UTR | 58 | 5.5 |
Gene Annotations
| PFAM: | |
| PANTHER: | |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | |
| Phytozome Locus Page |
Phenotypes
Our phenotype screens did not find statistically significant results for this gene.