Gene: Cre01.g014000
Overview
| Common name: | |
| Defline: | |
| Description: | |
| Synonyms: | Cre01.g014000.t1.1,g342.t1 |
| Chromosome: | chromosome 1 |
Protein Localization
A plasmid for expressing Cre01.g014000 tagged with the fluorescent protein Venus and affinity epitope 3xFLAG is available: pLM005-Cre01.g014000-Venus-3xFLAG
Imaged strain: CSI_LW01H9
Imaging conditions: Tris-Phosphate media, air, 150 uM photons/m2/s, shaking in 96-well plate; imaged after 16 hours.
Classification(s):
chloroplast/homogeneous/pyrenoid depleted
If you reference these protein localization data in a manuscript, please cite: Wang et al. 2023.
 |  |  |  |
| Venus | Chlorophyll | Bright field | Merged |
Protein-Protein Interactions
| Bait ID | Bait Name | Prey ID | Prey Name | Reference |
|---|---|---|---|---|
| Cre08.g362900 | PSBP4 | Cre01.g014000 | Mackinder et al. 2017 | |
| Cre16.g662600 | BST1,LCI11,LCI11C | Cre01.g014000 | Mackinder et al. 2017 |
Mutant Strains
| Insertion Junction | Mutant Strain | Insertion Junction Feature | Confidence (%) | Genome Version |
|---|---|---|---|---|
| CLIP2.004902_1 | CLIP2.004902 | 3'UTR | 80 | 6.1 |
| CLIP2.004902_2 | CLIP2.004902 | 3'UTR | 80 | 6.1 |
| CLIP2.005554_1 | CLIP2.005554 | intron | 80 | 6.1 |
| CLIP2.005554_2 | CLIP2.005554 | intron | 80 | 6.1 |
| CLIP2.006054_1 | CLIP2.006054 | intron | 80 | 6.1 |
| CLIP2.006054_2 | CLIP2.006054 | intron | 80 | 6.1 |
| CLIP2.006158_1 | CLIP2.006158 | intron | 80 | 6.1 |
| CLIP2.006597_1 | CLIP2.006597 | intron | 80 | 6.1 |
| LMJ.RY0402.044496_1 | LMJ.RY0402.044496 | CDS | 73 | 5.5 |
| LMJ.RY0402.090350_1 | LMJ.RY0402.090350 | intron | 73 | 5.5 |
| LMJ.RY0402.198915_1 | LMJ.RY0402.198915 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.198915_2 | LMJ.RY0402.198915 | 3'UTR | 95 | 5.5 |
| LMJ.RY0402.213341_1 | LMJ.RY0402.213341 | 3'UTR | 73 | 5.5 |
| LMJ.RY0402.236849_1 | LMJ.RY0402.236849 | CDS | 95 | 5.5 |
| LMJ.RY0402.236849_2 | LMJ.RY0402.236849 | CDS | 95 | 5.5 |
| LMJ.RY0402.251801_1 | LMJ.RY0402.251801 | CDS | 73 | 5.5 |
Gene Annotations
| PFAM: | |
| PANTHER: | |
| KEGG_ec: | |
| KEGG_orthology: | |
| KOG: | |
| Gene ontology terms:: | |
| Best arabidopsis TAIR name: | |
| Best arabidopsis TAIR symbol: | |
| Best arabidopsis TAIR defline: | |
| Phytozome Locus Page |
Phenotypes
Mutants in this gene exhibit a phenotype under the following conditions:
| Photosynthesis, screen 1 of 5 ( 78% confidence (FDR = 0.22)) |
| Photosynthesis, screen 3 of 5 ( 96% confidence (FDR = 0.04)) |
| Photosynthesis, screen 4 of 5 ( 93% confidence (FDR = 0.062)) |
| Photosynthesis, screen 5 of 5 ( 99% confidence (FDR = 0.0024)) |
| Photosynthesis or light sensitivity, screen 2 of 12 ( 94% confidence (FDR = 0.056)) |
| Photosynthesis or light sensitivity, screen 3 of 12 ( 95% confidence (FDR = 0.042)) |
| Photosynthesis or light sensitivity, screen 4 of 12 ( 97% confidence (FDR = 0.023)) |
| Photosynthesis or light sensitivity, screen 5 of 12 ( 97% confidence (FDR = 0.023)) |
| Photosynthesis or light sensitivity, screen 6 of 12 ( 99% confidence (FDR = 1.3e-05)) |
| Photosynthesis or light sensitivity, screen 7 of 12 ( 99% confidence (FDR = 2.4e-05)) |
| Photosynthesis or light sensitivity, screen 8 of 12 ( 99% confidence (FDR = 3.9e-05)) |
| Photosynthesis or light sensitivity, screen 9 of 12 ( 99% confidence (FDR = 4.2e-05)) |
| Photosynthesis or light sensitivity, screen 10 of 12 ( 99% confidence (FDR = 1.9e-05)) |
| Photosynthesis or light sensitivity, screen 11 of 12 ( 99% confidence (FDR = 0.00014)) |
| Photosynthesis or light sensitivity, screen 12 of 12 ( 99% confidence (FDR = 0.00013)) |
Note: FDR indicates the likelihood that a particular genotype-phenotype relationship is incorrect. Not all mutants in a particular gene show the same phenotype. Please see the mutant pages for each mutant's phenotypes. Complementation is needed to definitively prove a genotype-phenotype link. These data are from a pooled phenotyping experiment.
If you reference the phenotypic data above in a manuscript, please cite: Fauser et al. 2022 Nature Genetics.