Insertion junction: CLIP2.000006_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.000006
Chromosome:chromosome 6
Location:5910069
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g289850 SBE1 (1 of 3) 2.4.1.18 - 1,4-alpha-glucan branching enzyme / Glycogen branching enzyme; Starch Branching Enzyme 1 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGGCCACACCTCCGTCCACCTCGTGCTCTATGCGCTGGCTGGGTCTTGCT
Internal bar code:CTGATCCGTTTAAATATCTTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:483
LEAP-Seq percent confirming:55.5556
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:TCGACACCCTACCCCAATCT
Suggested primer 2:AGGCATGAAAACACACGTGC