Insertion junction: CLIP2.000009_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.000009
Chromosome:chromosome 2
Location:6184301
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre02.g120150 RBCS2 (1 of 2) K01602 - ribulose-bisphosphate carboxylase small chain (rbcS); Ribulose-1%252C5-bisphosphate carboxylase/oxygenase small subunit 2, chloroplastic intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCAACGCCCGCATTGTGTCGACGAAGGCTTTTGGCTCCTCTGTCGCTGT
Internal bar code:ACTACAGCAATCGTGGGGCTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:92
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:TTGCTTTTCCGTGCTGAAGC
Suggested primer 2:CAAAGTGACTATCGTGCGCG