Insertion junction: CLIP2.000023_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.000023
Chromosome:chromosome 2
Location:6184545
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g120150 RBCS2 (1 of 2) K01602 - ribulose-bisphosphate carboxylase small chain (rbcS); Ribulose-1%252C5-bisphosphate carboxylase/oxygenase small subunit 2, chloroplastic 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACAAGAGAAGTCACTCAACATCTTAAAATGGCCGCCGTCATTGCCAAGTC
Internal bar code:TTGATGTCAAAGGGGCCGTTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2017
LEAP-Seq percent confirming:78.0
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:50

Suggested primers for confirmation by PCR

Suggested primer 1:CCAAGAAAAAGCCGCCGAAA
Suggested primer 2:TCCCCTGCACGATGGTAGTA