Insertion junction: CLIP2.000029_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.000029
Chromosome:chromosome 10
Location:2947054
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g440050 CSP41A,Csp41a,SNE12,RAP41 (1 of 1) PTHR10366//PTHR10366:SF278 - NAD DEPENDENT EPIMERASE/DEHYDRATASE // CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA A, CHLOROPLASTIC; Chloroplast stem-loop-binding protein 41a intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCCGCCGATGCTGGCACGTCCAGGCTGACCCTGGCCCGTGTCTGCTGCT
Internal bar code:GATAACACTGTCGGATTAGTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:292
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:TCACCACTTCCCTCTCGCTA
Suggested primer 2:TTGTAGTCGTTGACCAGGCC