Insertion junction: CLIP2.000032_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.000032
Chromosome:chromosome 8
Location:2596759
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g373100 CYP97C3,CYP25 Cytochrome P450, CYP97 superfamily; (1 of 1) 1.14.99.45 - Carotene epsilon-monooxygenase / LUT1 3'UTR
Cre08.g373150 (1 of 58) PTHR12393//PTHR12393:SF6 - SPHINGOMYELIN PHOSPHODIESTERASE RELATED // SPHINGOMYELIN PHOSPHODIESTERASE 2 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCATGTGCCGCTATTGAACCACTGAAGCTCTGGGATACGCAGCCCCAAC
Internal bar code:TACACTCTGTGGGGTCCGGCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:4905
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:TGTCGTACACACCACACCAG
Suggested primer 2:CGGTCGATCTGTAACTCGGG