Insertion junction: CLIP2.000038_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.000038
Chromosome:chromosome 6
Location:5018400
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g281766 (1 of 77) IPR001623 - DnaJ domain 3'UTR
Cre06.g281800 (1 of 6) PF09353 - Domain of unknown function (DUF1995) (DUF1995) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTAGTGTCAGCGGCAATGCTTGTAGCCTCGTGGGCGCCAGATGCATGCGG
Internal bar code:CTCGCACTCCTAGCGGGGGTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:5111
LEAP-Seq percent confirming:93.3333
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:CTCGGCCCTATGCATTTTGC
Suggested primer 2:CTTGTTGTGTGCCACCCATG