Insertion junction: CLIP2.000041_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.000041
Chromosome:chromosome 6
Location:2912458
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g273050 CGLD10 Conserved in the Green Lineage and Diatoms; (1 of 1) PTHR35279//PTHR35279:SF1 - FAMILY NOT NAMED // ARABINANASE/LEVANSUCRASE/INVERTASE intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCGTAAATTGGCTTCTGCAGTCCTGACTTGGGACAAACGATATGAGCAG
Internal bar code:AGTAGGCCGATTCATGTCCTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:2505
LEAP-Seq percent confirming:72.7273
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:22

Suggested primers for confirmation by PCR

Suggested primer 1:CCAGCTAGACAACAACCCGT
Suggested primer 2:GAGTGCTGGCCTAAACGAGT