Insertion junction: CLIP2.000041_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.000041
Chromosome:chromosome 6
Location:2912460
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g273050 CGLD10 Conserved in the Green Lineage and Diatoms; (1 of 1) PTHR35279//PTHR35279:SF1 - FAMILY NOT NAMED // ARABINANASE/LEVANSUCRASE/INVERTASE intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCAAAACAAGATCGGCTGGGGGAGTGATGTGCATGCAGCCCTAGGCCCC
Internal bar code:AGTAGGCCGATTCATGTCCTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1630
LEAP-Seq percent confirming:92.8571
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:GAGTGCTGGCCTAAACGAGT
Suggested primer 2:CCAGCTAGACAACAACCCGT