Insertion junction: CLIP2.000041_3

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.000041
Chromosome:chromosome 17
Location:3066411
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g720261 (1 of 1) PTHR12482//PTHR12482:SF5 - UNCHARACTERIZED // PROTEIN C09D4.4, ISOFORM C CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGATCTTGCGCGCCGCGCTGACTCAGCCCGAGGTGGAGCCGTACAAGCA
Internal bar code:TTCCTCTTCACTGATGGACGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:297
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:CCACCACAAGCTTGAACACG
Suggested primer 2:CTTGGGTTCGTGATTTCGCC