Insertion junction: CLIP2.000048_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.000048
Chromosome:chromosome 9
Location:5421508
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre09.g408464 (1 of 1) PF10637 - Oxoglutarate and iron-dependent oxygenase degradation C-term (Ofd1_CTDD) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGCGTGTGCGCCACCACGGCCTCCTGCCGCACCCGCTGCTGCAGCTGC
Internal bar code:CACTCTCATAGCCGCGTGGCTT

Confirmation - LEAP-Seq

LEAP-Seq distance:316
LEAP-Seq percent confirming:83.3333
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:CCATATCGGGCTGGTACCAC
Suggested primer 2:GCTCTCGTCCAGATACACCG