Insertion junction: CLIP2.000054_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.000054
Chromosome:chromosome 7
Location:515615
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre07.g316050 CDJ2 Chloroplast DnaJ-like protein 2; (1 of 4) K03686 - molecular chaperone DnaJ (dnaJ) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACCCGCCCGCCCGGACGCACAGAGAACTTCTACGACATCCTGGGCGTGT
Internal bar code:GTAATTGGCGGTAGAATAGTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:548
LEAP-Seq percent confirming:71.4286
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:ACCTCCATGAACCGCTTCTG
Suggested primer 2:AACTGAAGGCTCTCCACAGC