Insertion junction: CLIP2.000059_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.000059
Chromosome:chromosome 3
Location:5943255
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g189000 RAD54A,SRH8 SNF2-related DNA/RNA helicase; (1 of 1) PTHR10799//PTHR10799:SF607 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // SNF2-RELATED DOMAIN-CONTAINING PROTEIN intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATAGCACCGCACACCCCGCCTGCCCCAGCCACACCCCAGCCACACCCTGC
Internal bar code:TGACAGGGCTCTAGGAGTGGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:3407
LEAP-Seq percent confirming:97.2603
LEAP-Seq n confirming:71
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:73

Suggested primers for confirmation by PCR

Suggested primer 1:ATACGGTACAGCTGACCCCT
Suggested primer 2:CGTTTTGTGGGCTGTCAAGG