Insertion junction: CLIP2.000136_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.000136
Chromosome:chromosome 12
Location:5671812
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g531900 FLVA,FLVA1 (1 of 2) 1.5.3.22 - Coenzyme F420H(2) oxidase; Thylakoid flavodiiron protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGACTCCCGCGTCCCTCCACCTCCCTCCGTCCAACCCTGCCCAATCCACC
Internal bar code:CGGACGCCCAAGACCAGCCGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1032
LEAP-Seq percent confirming:95.0
LEAP-Seq n confirming:19
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:GATATGCTGCAACGGCTGTG
Suggested primer 2:GTCATATGGCTAGCGGGCTT