Insertion junction: CLIP2.000204_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.000204
Chromosome:chromosome 7
Location:4244868
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g341850 TIF2,INFB,IF2,EIF2,CIF2 Chloroplast translation initiation factor 2; (1 of 1) PTHR23115//PTHR23115:SF138 - TRANSLATION FACTOR // TRANSLATION INITIATION FACTOR IF-2, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGCAGAGGACCGGGGCCCGCGGTCATTTAGCAAGAGGGCAAGGTTGCGT
Internal bar code:TGGGATTTGGTTGCTATGTATT

Confirmation - LEAP-Seq

LEAP-Seq distance:344
LEAP-Seq percent confirming:27.2727
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:TTTGAAACCGCTTCAGCAGC
Suggested primer 2:CCCTCTTCCATTTCCCACCC