Insertion junction: CLIP2.000286_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.000286
Chromosome:chromosome 11
Location:2166895
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467737 (1 of 1) PTHR18937//PTHR18937:SF160 - STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER // SUBFAMILY NOT NAMED CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTCCTCCTCCAGCTTGCGGACCTGTCAGGTACGGTGGTGGCAGGTTGGG
Internal bar code:ACTACGTTACATGGCAAAGTCC

Confirmation - LEAP-Seq

LEAP-Seq distance:2755
LEAP-Seq percent confirming:97.619
LEAP-Seq n confirming:41
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:42

Suggested primers for confirmation by PCR

Suggested primer 1:GCTGGTATGCGCCTTTGATG
Suggested primer 2:ATACTTGTCACCAGGCTGCC