Insertion junction: CLIP2.000292_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.000292
Chromosome:chromosome 7
Location:3337374
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g334900 (1 of 3) IPR004089 - Methyl-accepting chemotaxis protein (MCP) signalling domain outside_mRNA
Cre07.g334950 (1 of 107) PF00069//PF07714 - Protein kinase domain (Pkinase) // Protein tyrosine kinase (Pkinase_Tyr) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACAGAGTAACAGGCCAACTGACACGCTCCCAGACACCATTCATTCGCCC
Internal bar code:AACGGTATTGTTGGTTGGCTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:2136
LEAP-Seq percent confirming:96.2963
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:CTCGCTGGGGACTCGTTATC
Suggested primer 2:ACAGGCAGGTGTTCCAAACA