Insertion junction: CLIP2.000300_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.000300
Chromosome:chromosome 17
Location:5218017
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g737150 3'UTR
Cre17.g737200 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAACATATTGAAAAGCTTGCATCCACTCGGTAGCGGCAGAGCCGAGACAA
Internal bar code:CAGCTTGTGATAGAGGCTCTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1692
LEAP-Seq percent confirming:94.2857
LEAP-Seq n confirming:33
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCCACTCCATCTCCTCCA
Suggested primer 2:ACATGCATTCAGGCTGACGA