Insertion junction: CLIP2.000305_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.000305
Chromosome:chromosome 17
Location:5986356
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g742400 PTK17 Protein tyrosine kinase; (1 of 1) IPR000014//IPR000104//IPR000719//IPR001245//IPR002290//IPR011009//IPR020635 - PAS domain // Antifreeze protein, type I // Protein kinase domain // Serine-threonine/tyrosine-protein kinase catalytic domain // Serine/threonine/dual specificity protein kinase, catalytic domain // Protein kinase-like domain // Tyrosine-protein kinase, catalytic domain CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGCAGCCTGCGCGCTCCAGCCAGCGAGGGTGGCGCGGATGGAGGCGGCG
Internal bar code:CCGATTGTAGCTGTGTAAAAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:5094
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:135
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:135

Suggested primers for confirmation by PCR

Suggested primer 1:ACCTGTAGACCGGTTCCGTA
Suggested primer 2:AACTCTTCCGCCCTGCTAAC