Insertion junction: CLIP2.000355_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.000355
Chromosome:chromosome 2
Location:6197615
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g120250 CDPK7,STT7 (1 of 3) PTHR11584:SF316 - SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC; Chloroplast protein kinase required for state transitions intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAATTTACACGTCACCGCCAAACTTTGTGCCGCGAGGCCGCCTGGCCCTG
Internal bar code:GTTGGGCAATGCTATATGTAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1083
LEAP-Seq percent confirming:96.1538
LEAP-Seq n confirming:25
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:GCTGCCACACACTTCAACTG
Suggested primer 2:CGGTCTACAGGAGCATCGAC