Insertion junction: CLIP2.000365_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.000365
Chromosome:chromosome 13
Location:5260463
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g607900 CPLD68 Conserved in the Plant Lineage and Diatoms; (1 of 96) IPR019734 - Tetratricopeptide repeat CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCTGTCCGTGCATTGGCCTCGTCCTGCTGCCGCTCCTCCTCACTCGCC
Internal bar code:CAAGCGTCTGACCTTGTATGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1827
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:37
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:37

Suggested primers for confirmation by PCR

Suggested primer 1:ATGGAGTAGCCCAGGTACGT
Suggested primer 2:GTTCCCACCACACTCGTCAT