Insertion junction: CLIP2.000417_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.000417
Chromosome:chromosome 3
Location:5944951
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g189000 RAD54A,SRH8 SNF2-related DNA/RNA helicase; (1 of 1) PTHR10799//PTHR10799:SF607 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // SNF2-RELATED DOMAIN-CONTAINING PROTEIN CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTCACCATCACGCCGTCCGCGAACTGCTTGCTGGCCTTCTTCTGCGGTG
Internal bar code:TCACGTCACATAGTTATAACGT

Confirmation - LEAP-Seq

LEAP-Seq distance:3222
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:71
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:71

Suggested primers for confirmation by PCR

Suggested primer 1:GTTTGAGCCAACTGCACCTG
Suggested primer 2:CCCACATTGCCAGCAGTTTC