Insertion junction: CLIP2.000447_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.000447
Chromosome:chromosome 9
Location:4151900
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g399552 LCR1 Low-CO2 response regulator, Myb-like transcription factor; (1 of 25) IPR001005//IPR009057//IPR017930 - SANT/Myb domain // Homeodomain-like // Myb domain 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTGCAGTAATAGGCACAATCACTTATGTGTCTGTACCAGGCTGAGCCCA
Internal bar code:GGTCAGTTGTTGGAAGACGGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1766
LEAP-Seq percent confirming:94.8276
LEAP-Seq n confirming:55
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:58

Suggested primers for confirmation by PCR

Suggested primer 1:TGAAAGTCCTCCAACCGTCG
Suggested primer 2:TAATACAATCCGCCTCCCGC