Insertion junction: CLIP2.000473_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.000473
Chromosome:chromosome 3
Location:5383705
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g183550 (1 of 3) PTHR15160//PTHR15160:SF4 - VON HIPPEL-LINDAU PROTEIN // PROTEIN F23H11.5 3'UTR
Cre03.g183600 (1 of 1) PF15375 - Domain of unknown function (DUF4602) (DUF4602) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGCCATGTCATGCTGTAACCATGTCAAGTCCGGATGTACTGTCCCCGCCG
Internal bar code:CGTGTGGTTCGTGGGGAGCGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:205
LEAP-Seq percent confirming:73.3333
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:CCTGCACTTGTTCCAACTGC
Suggested primer 2:TTACACACTACCACCACCGC