Insertion junction: CLIP2.000498_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.000498
Chromosome:chromosome 3
Location:5381623
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g183550 (1 of 3) PTHR15160//PTHR15160:SF4 - VON HIPPEL-LINDAU PROTEIN // PROTEIN F23H11.5 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCCGGTGTGAGTGTCAGGTCCGCGTCGCGCTGGAAAACGAGCACGCCGC
Internal bar code:TTTGCAGAAGATCGAGGGGCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1566
LEAP-Seq percent confirming:93.3333
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:CGTTTGCACTTGGACTTGGG
Suggested primer 2:CACAGTTGTGGAGCTTGTGC