Insertion junction: CLIP2.000531_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.000531
Chromosome:chromosome 1
Location:5613499
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g040050 TPK1 (1 of 1) K00949 - thiamine pyrophosphokinase (thiN, TPK1, THI80); Thiamine pyrophosphokinase intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGAAGTCGGGATTCCCACCGTGTTGCTCTGTGGCTGCTGCTGGAGGGGG
Internal bar code:TGGTTTGGTTGGGCTCCTAGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:876
LEAP-Seq percent confirming:78.5714
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:14

Suggested primers for confirmation by PCR

Suggested primer 1:GGTGATACCGTAGCGCGTTA
Suggested primer 2:TTGCTCGGACTTCTTGGGTC