Insertion junction: CLIP2.000540_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.000540
Chromosome:chromosome 2
Location:103307
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g073850 CGL54,LPA19 (1 of 1) PTHR34041//PTHR34041:SF3 - FAMILY NOT NAMED // PHOTOSYSTEM II D1 PRECURSOR PROCESSING PROTEIN PSB27-H2, CHLOROPLASTIC; homolog of Low Photosystem II Accumulation 19 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAAACCCCACAGCTAACTTCCCACTGATGCTGCTCCTGCTGCTTACTACA
Internal bar code:GTTGTGAAGCATTGACGAGTCC

Confirmation - LEAP-Seq

LEAP-Seq distance:1115
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:ACTGTCATGCGCACCAGTTA
Suggested primer 2:CAGAGTGGGGTCTGGAACAC