Insertion junction: CLIP2.000549_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.000549
Chromosome:chromosome 4
Location:1432593
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre04.g214200 (1 of 30) IPR000253 - Forkhead-associated (FHA) domain intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAGCCAGCCCTAGCACGGTCAGGTCGGCCTGCGCTGGAGGCATTCAGCTC
Internal bar code:ATGCGCTAGGGCACGGAGCAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:382
LEAP-Seq percent confirming:82.1429
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:CAGGAGTCTCTGGCCTACCT
Suggested primer 2:TCGCCATGAAGAAGTTGCCT