Insertion junction: CLIP2.000560_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.000560
Chromosome:chromosome 3
Location:5382084
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g183550 (1 of 3) PTHR15160//PTHR15160:SF4 - VON HIPPEL-LINDAU PROTEIN // PROTEIN F23H11.5 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCTTACCGGTGGCCGGGTCCCCAAAGAATAGGCGCCCCACGAAGATGTC
Internal bar code:TGTTGTGCTGTACTGGTCTGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1460
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:15

Suggested primers for confirmation by PCR

Suggested primer 1:TTGACCAGAGTCGTGTCTGC
Suggested primer 2:GCAGCTTGATGGCATCCATG