Insertion junction: CLIP2.000611_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.000611
Chromosome:chromosome 13
Location:5264988
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g607900 CPLD68 Conserved in the Plant Lineage and Diatoms; (1 of 96) IPR019734 - Tetratricopeptide repeat CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTTGCAGTGGTACTGGACGCGGGCCCCTCCTGGGAGCTACGCAGTGCT
Internal bar code:AGGATCATTTGCACCCACATCG

Confirmation - LEAP-Seq

LEAP-Seq distance:2418
LEAP-Seq percent confirming:88.2353
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:34

Suggested primers for confirmation by PCR

Suggested primer 1:CAGATGGTGACACCCTGTCC
Suggested primer 2:CCGACCTCATGGGGCTATTC