Insertion junction: CLIP2.000706_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.000706
Chromosome:chromosome 3
Location:2322939
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g158000 GSAT,GSA,GSA1 Glutamate-1-semialdehyde aminotransferase; (1 of 1) 5.4.3.8 - Glutamate-1-semialdehyde 2,1-aminomutase / Glutamate-1-semialdehyde aminotransferase 3'UTR
Cre03.g158050 PPP11 (1 of 1) PF00686//PF07228 - Starch binding domain (CBM_20) // Stage II sporulation protein E (SpoIIE) (SpoIIE); Phosphoprotein phosphatase 2C-related 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCTCCTCGAGTGACCGGTCGATTTGCATCAAGTTTTGCATCACGCAAAA
Internal bar code:TAGGTCATTGCCATAGAACAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:5888
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:71
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:71

Suggested primers for confirmation by PCR

Suggested primer 1:CTACGGCTGCAGATGTAGGG
Suggested primer 2:GTCCTGACGGTGACTTTCGT