Insertion junction: CLIP2.000726_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.000726
Chromosome:chromosome 6
Location:2008154
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g265150 (1 of 1) K11833 - ubiquitin carboxyl-terminal hydrolase 2/21 [EC:3.4.19.12] (USP2_21) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTGTCACTGCACAGTGTGTTCGACGTGCATCAATGCCCGCACGGCGAG
Internal bar code:TTTTTGGGACCTTGCCAATACG

Confirmation - LEAP-Seq

LEAP-Seq distance:1599
LEAP-Seq percent confirming:58.6207
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:ACCAGTACGCTGAATGCACA
Suggested primer 2:CCGTTGATTCCCAGACTGCT