Insertion junction: CLIP2.000745_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.000745
Chromosome:chromosome 12
Location:4039288
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g516300 CGL154 Conserved in the Green Lineage; (1 of 11) PF13229 - Right handed beta helix region (Beta_helix) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCGGCACAGTCACGCCCTGCGCCAACGCAGTGGTGTGGGGCAACTTGTTG
Internal bar code:GACGTTACCATTTTCACCTTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1280
LEAP-Seq percent confirming:53.5714
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:CACACCACGCAAAGACAGTG
Suggested primer 2:TTGGCTTCAACCTGGGGTTT