Insertion junction: CLIP2.000766_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.000766
Chromosome:chromosome 3
Location:5945564
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g189000 RAD54A,SRH8 SNF2-related DNA/RNA helicase; (1 of 1) PTHR10799//PTHR10799:SF607 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // SNF2-RELATED DOMAIN-CONTAINING PROTEIN CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGTCGCAAGGGGCCTCGGCTGCCCCAGCGACCACGCAAAGCGCTGCGCG
Internal bar code:TCAACAGGGAGGATCCGATGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1871
LEAP-Seq percent confirming:58.3333
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:GCATTTCAGCAGCCAACACA
Suggested primer 2:TTTGCCAAATCCGCACTGTG