Insertion junction: CLIP2.000788_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.000788
Chromosome:chromosome 1
Location:3083280
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g019550 ankryin repeat containing protein; (1 of 2) PTHR24128:SF17 - E3 UBIQUITIN-PROTEIN LIGASE XBAT32 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGGAAGTCTGGTCACCTTCCGCACGCACCTGCAGACGCCAGCCTGTCTG
Internal bar code:TGTATATCGGGTCGCTACTTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1074
LEAP-Seq percent confirming:92.8571
LEAP-Seq n confirming:26
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:GCGGACCTAGACTTTTGGCT
Suggested primer 2:CCCAAAGCACTCACTTGCAC