Insertion junction: CLIP2.000789_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.000789
Chromosome:chromosome 3
Location:5733098
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g187150 (1 of 1) IPR001623//IPR027986//IPR027989//IPR028031 - DnaJ domain // T-cell activation inhibitor, mitochondrial // Domain of unknown function DUF4461 // Domain of unknown function DUF4460 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCCAGTTGCAGCTTATGAGACTACGTAAGCGAATGGACTGCGGCATCGA
Internal bar code:ATCGCCACCATATTCGCGGCAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1950
LEAP-Seq percent confirming:90.2439
LEAP-Seq n confirming:37
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:41

Suggested primers for confirmation by PCR

Suggested primer 1:ACCTGTAGACCGCTGGTTTG
Suggested primer 2:TGCTGTCCAAATAGCGCTCA