Insertion junction: CLIP2.000812_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.000812
Chromosome:chromosome 16
Location:3256977
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g666050 CPLD49,SCD1 (1 of 4) PF03435 - Saccharopine dehydrogenase NADP binding domain (Sacchrp_dh_NADP); Cytochrome b6f biogenesis protein intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCACGTAAGCACCAGCACAGCCTCCCGCCAAAAATGCTCGGGAGGCAAGG
Internal bar code:TGGAAGGGAGCTGCCGATAGAC

Confirmation - LEAP-Seq

LEAP-Seq distance:4646
LEAP-Seq percent confirming:98.913
LEAP-Seq n confirming:91
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:92

Suggested primers for confirmation by PCR

Suggested primer 1:GCCGCAGTGCATGTGATATG
Suggested primer 2:GTAGTGCCTAGTGTCCGCTC