Insertion junction: CLIP2.000836_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.000836
Chromosome:chromosome 3
Location:5896907
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g188700 PLP6,PLAP6 Plastid lipid associated protein 6; (1 of 17) PF04755 - PAP_fibrillin (PAP_fibrillin) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGTCCTGCGCCCACCAGTCGCTGCGGTGCACAGCCCCGCCGTCGACCCAA
Internal bar code:GCCTGGACGTGAAGCTTTTAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:280
LEAP-Seq percent confirming:90.9091
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:11

Suggested primers for confirmation by PCR

Suggested primer 1:AGATCTTTTGGAGCTGGGCC
Suggested primer 2:TCTGTCGCTTCCATGCCTTT