Insertion junction: CLIP2.000866_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.000866
Chromosome:chromosome 16
Location:2432123
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g659950 PRPS5 Chloroplast Ribosomal Protein S5; (1 of 2) K02988 - small subunit ribosomal protein S5 (RP-S5, MRPS5, rpsE) 3'UTR
Cre16.g660000 CMT1A,CPLD63 (1 of 2) PTHR12608:SF7 - GDT1-LIKE PROTEIN 2, CHLOROPLASTIC; Mn transport into chloroplast 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGACAGCGCTGGTCAGGCATGGCTAGCTGCCAGGCAGATACAGCCCGGT
Internal bar code:GTTACACAGATGCGGAGTTTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1633
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:103
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:103

Suggested primers for confirmation by PCR

Suggested primer 1:CATTATCGTGCGCATGTGCA
Suggested primer 2:TTGACGGAATGCGTTGGGTA