Insertion junction: CLIP2.000887_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.000887
Chromosome:chromosome 10
Location:2485419
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre10.g435800 CSP41b,CSP41B,SNE11,RAP38 Chloroplast stem-loop-binding protein 41b; (1 of 1) PTHR10366:SF289 - CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA B, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTGGACACTAATCCCCACCCAAGGTTAGGTATGGTCTCGGCTCGGCAGG
Internal bar code:TTGTTGTCAGACTGGATTCTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:639
LEAP-Seq percent confirming:94.4444
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:18

Suggested primers for confirmation by PCR

Suggested primer 1:ATTCCATGCTCCCTCCTTGC
Suggested primer 2:ATTGAGGTCGGGCTCACAAG