Insertion junction: CLIP2.000923_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.000923
Chromosome:chromosome 2
Location:8247233
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g143550 ELIP3,ELI4,ELI3,LCI16 Early light-induced LHC-like protein; (1 of 6) PTHR14154:SF5 - EARLY LIGHT-INDUCED PROTEIN 1, CHLOROPLASTIC-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATCTGCGCCATCCCCGCATGCTCTTCATGCGTAGACCACACCCTGCGTG
Internal bar code:ATATATTTAGACTCGGCTTTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1076
LEAP-Seq percent confirming:41.6667
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:14
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:AAACGCGACCCAACCACTAT
Suggested primer 2:TACCGTGCCTCAGCTCTACT