Insertion junction: CLIP2.000934_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.000934
Chromosome:chromosome 3
Location:4130473
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g172700 outside_mRNA
Cre03.g172750 (1 of 1) IPR002893//IPR012677 - Zinc finger, MYND-type // Nucleotide-binding alpha-beta plait domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTTGAGCTCGTTCATGGCAGTAGTACATGGCCGCAGAGCAACACCTTAG
Internal bar code:AATCTAGAATCTATGAAGGTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2032
LEAP-Seq percent confirming:97.8723
LEAP-Seq n confirming:46
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:47

Suggested primers for confirmation by PCR

Suggested primer 1:ACTGCCGCGATTGGATATGT
Suggested primer 2:CACACGAGTCTGCAGGAGTT