Insertion junction: CLIP2.000954_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.000954
Chromosome:chromosome 1
Location:2607147
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g015500 CGL91 (1 of 18) PTHR10774 - EXTENDED SYNAPTOTAGMIN-RELATED; Conserved in the Green Lineage 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTTTTAAAGCTAGAGGTAACCCACTGCCAGAGCGTCAAGTGGCAATGTT
Internal bar code:GGCCTCTAATTTAAGGTTAATA

Confirmation - LEAP-Seq

LEAP-Seq distance:341
LEAP-Seq percent confirming:20.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:GTAGGCAGTTTTGGTTGCGG
Suggested primer 2:GCAAGCACGCAAAACAAACC