Insertion junction: CLIP2.000981_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.000981
Chromosome:chromosome 13
Location:5260850
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g607900 CPLD68 Conserved in the Plant Lineage and Diatoms; (1 of 96) IPR019734 - Tetratricopeptide repeat intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGCACGCTAGAGCACACATACGGCTACGGCACGTCGCGTTTGTGCTCTC
Internal bar code:GATTGTTCATTGAGCTGTCATC

Confirmation - LEAP-Seq

LEAP-Seq distance:309
LEAP-Seq percent confirming:66.6667
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:3

Suggested primers for confirmation by PCR

Suggested primer 1:ATGGAGTAGCCCAGGTACGT
Suggested primer 2:TCCTCCTCACTCGCCACATA