Insertion junction: CLIP2.001022_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.001022
Chromosome:chromosome 16
Location:412627
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g693601 ISG-C2,ISG2 (1 of 5) PTHR16631//PTHR16631:SF9 - FAMILY NOT NAMED // GLUCAN 1,3-BETA-GLUCOSIDASE; Hydroxyproline-rich cell wall protein 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTTTGAAAGCTACGAAGCGTGTACCCAAGGTGTTGTGGGTCGCCGATGT
Internal bar code:GCTAGCTCTGTAAGATGCTCAA

Confirmation - LEAP-Seq

LEAP-Seq distance:2070
LEAP-Seq percent confirming:73.913
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:CGAGCAGATGCCGGTAATCT
Suggested primer 2:AACAACTGCACCCCTTCCAA