Insertion junction: CLIP2.001035_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.001035
Chromosome:chromosome 10
Location:3888693
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g446350 CGLD14 Conserved in the Green Lineage and Diatoms; (1 of 1) PTHR31407//PTHR31407:SF17 - FAMILY NOT NAMED // PSBP DOMAIN-CONTAINING PROTEIN 3, CHLOROPLASTIC 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTCGAGGGTTGTACGCTCTGTTTGTGTTATAAACCTATATATAGTACTG
Internal bar code:CCTTTTGGTATTGCTTGGCAAA

Confirmation - LEAP-Seq

LEAP-Seq distance:3443
LEAP-Seq percent confirming:96.25
LEAP-Seq n confirming:77
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:80

Suggested primers for confirmation by PCR

Suggested primer 1:ACCATGGAGCGATGATCGTC
Suggested primer 2:GGAGGGCACAATTCCCATGA