Insertion junction: CLIP2.001050_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.001050
Chromosome:chromosome 13
Location:926962
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g567950 STA1,AGP1 ADP-glucose pyrophosphorylase large subunit; (1 of 1) PTHR22572:SF119 - GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 1, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCTTCTTTTACTCTACAGTCCCCTGCGGCTGCGTCGCCGCCCAGGTACA
Internal bar code:ACTCTCTGTAAATGCTTTAATA

Confirmation - LEAP-Seq

LEAP-Seq distance:337
LEAP-Seq percent confirming:22.2222
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTGTTTCGCCATGGAACC
Suggested primer 2:ATCCCTGCGACGAGTTGTTT