Insertion junction: CLIP2.001078_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.001078
Chromosome:chromosome 9
Location:6519044
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g415700 CAH3 Carbonic anhydrase 3; (1 of 1) PTHR18952//PTHR18952:SF86 - CARBONIC ANHYDRASE // CARBONIC ANHYDRASE-LIKE PROTEIN 1-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTTGTCGCTGGCCGGCGTGCACCATGTGCCCGACGAGATGATGTTTGGT
Internal bar code:TTATAGGGGGTTAGATACCTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:835
LEAP-Seq percent confirming:43.75
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:18
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:TTCATGCAGCCCATCAAGGT
Suggested primer 2:TCGGCACACAGACACTTCTC