Insertion junction: CLIP2.001098_5

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.001098
Chromosome:chromosome 7
Location:3234855
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g334150 (1 of 1) PTHR23097//PTHR23097:SF124 - TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER // SUBFAMILY NOT NAMED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTGACCTGAGCGACTCCCTGAGTGACCCGAGCCTCTGATCCCTACAACA
Internal bar code:GCCGATGTGCGTACGTTTCATG

Confirmation - LEAP-Seq

LEAP-Seq distance:1956
LEAP-Seq percent confirming:84.9057
LEAP-Seq n confirming:45
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:53

Suggested primers for confirmation by PCR

Suggested primer 1:TGCTGCGTTTGTTGTACGTG
Suggested primer 2:GTGCACAACACGTCTGCAAT